LAYOUT: post TITLE: Workflow for Diploria labyrinthiformis functional annotation CATEGORY: [ de novo transcriptome, RNA seq ] TAG: [ Diploria labyrinthiformis, Bioinfamatics, de novo transcriptome ] —

Designing a workflow for a functional annotation for Diploria labyrinthiformis de novo transcriptome.

ENCORE Priming Mdec Tagseq SRA upload TO NCBI

ENCORE Priming dsDNA Qubit Quantification

Library Prep for The ENCORE Priming Project in Bermuda

Library Prep for The ENCORE Priming Project in Bermuda

Pooling Libraries using Illumina

Library Prep for The ENCORE Priming Project in Bermuda

Library Prep for The ENCORE Priming Project in Bermuda

ENCORE Priming dsDNA Qubit Quantification

Library Prep for The ENCORE Priming Project in Bermuda

Broad Range dsDNA, High Sensitivity dsDNA, Broad Range RNA, and High Sensitivity RNA

ENCORE Priming dsDNA Qubit Quantification

Library Prep for The ENCORE Priming Project in Bermuda

Library Prep for The ENCORE Priming Project in Bermuda

Library Prep for The ENCORE Priming Project in Bermuda

Library Prep for The ENCORE Priming Project in Bermuda

Library Prep for The ENCORE Priming Project in Bermuda

Library Prep for The ENCORE Priming Project in Bermuda

Library Prep for The ENCORE Priming Project in Bermuda

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

RNA and DNA Extractions for ENCORE Priming Project

Transferring files from Andromeda to Unity through the Globus Connect platform

This pipeline is based on Zoe Dellaert’s Instructions found on github here and information on the use of unity and guidelines on scratch directories, moving files in unity can be found here

ENCORE Mdec Tagseq SRA upload TO NCBI

Autoclave Protocol CBLS

NCBI Sequence Read Archive uploads

This post shows the samples quantified for Chl-a and Chl-c2 concentration in Symbiodiniaceae from Madracis decactis and Diploria labyrinthiformis coral tissue

Quality Control of RNAseq files for Montastraea cavernosa (Mcav) ENCORE 2022 TPC project

Quality Control of RNAseq files for Diploria labyrinthiformis (Dlab) ENCORE 2022 TPC project

Quantifying Chl-a and Chl-c2 Concentration in Symbiodiniaceae from Madracis decactis and Diploria labyrinthiformis tissue

Protein Content of Madracis decactis and Diploria labyrinthiformis tissue for Physiological Analyses

Protein Content of Madracis decactis and Diploria labyrinthiformis tissue for Physiological Analyses

Protein Content of Madracis decactis and Diploria labyrinthiformis tissue for Physiological Analyses

Airbrushing Coral Homogenate for Physiological Analyses

ENCORE Priming Physiological Analyses Pipeline

ENCORE Priming Physiological Analyses Pipeline

Workflow for Encore Madracis decactis Taqseq data analysis

Quality Control of RNAseq files for Madracis decactis (Mdec) ENCORE 2022 TPC project

Bermuda Porites astreoides Making Squaricals

This protocol was written by Maggie Schedl for the Putnam, Prada, and Puritz labs